PrepareTorusFiles.RdPrepares two files necessary for running torus: z-score file and annotations file
PrepareTorusFiles(cleaned_sumstats, bed_annotations)
| cleaned_sumstats | cleaned summary statistics from RunCleaner or other |
|---|---|
| bed_annotation | a directory containing annotations in bed format. The bed file must have three columns: chr, start, end. Chromosomes should be numeric (no "chr") and should be in hg19/b37 format. You will get wrong results if you use hg38 or other (reference panel is hg19). |
NULL (results are written to disk in ./.temp)